CRC Software ListΒΆ
CRC uses the lmod environment modules system to provision software to our users. To query whether a software is available, use:
module spider name_of_software
| Software | Version |
|---|---|
| 3seq | 170612 |
| abaqus | 2016-vandegeest |
| abaqus | 2017-general |
| abaqus | 2017-vandegeest |
| abinit-epg | 7.10.4 |
| abinit | 7.10.5 |
| abinit | 8.10.2 |
| abinit | 9.6.2 |
| abyss | 2.1.0 |
| adf | 2017.108 |
| admixmap | 3.8.3103 |
| admixture | 1.3.0 |
| advisor | 2019.4 |
| af4 | 0805_2019 |
| afni | 18.0.22 |
| afni | 21.3.06 |
| albacore | 2.3.4 |
| amber | 14-titanxb |
| amber | 14 |
| amber | 16_gcc-5.4.0 |
| amber | 16-gtx1080 |
| amber | 16-titanx |
| amber | 16 |
| amber | 18_AMD_gcc-8.2.0 |
| amber | 18_AMD_intel-2019.4 |
| amber | 18_gcc-5.4.0 |
| amber | 18_x64 |
| amber | 18-pmemdGTI |
| amber | 18 |
| amber | 18-2019_01 |
| amber | 20_cuda-11.1.1 |
| amber | 20 |
| amber | 22-beta |
| amber | 22 |
| amd | 3.0.0 |
| ancestrymap | 2 |
| anndata | 0.7.6 |
| anndata | 0.8.0 |
| annovar | 2018Apr16 |
| ansys | 19.2 |
| ansys | 21.2 |
| ansys | 2022R1 |
| ansys | 2023R1 |
| ansysem | 21.2 |
| ants | 20190225 |
| apptainer | 1.2.2 |
| arboreto | 0.1.5 |
| arcashla | 0.5.0 |
| aria2 | 1.34.0 |
| arpack-ng | 1 |
| arpack-ng | 3.9 |
| arpack | 1 |
| arriba | 2.1.0 |
| arriba | 2.3.0 |
| aspeak | 2.0.1 |
| atacseq_harvard | 0.1 |
| ataqv | 1.2.1 |
| athlates | 2014_04_26 |
| augustus | 3.3 |
| autodock_vina | 1.1.2 |
| awscli | 1.16.135 |
| azcopy | 10.11.0 |
| bam-readcount | 0.8 |
| bamqc | feb_6_2018 |
| bamtools | 2.5.1 |
| bamutil | 1.0.14 |
| basespace | 1.0.0 |
| bash | 5.1 |
| bats | 0.4.0 |
| bazel | 0.5.4 |
| bazel | 0.9.0 |
| bazel | 0.11.1 |
| bazel | 0.12.0 |
| bazel | 0.16.1 |
| bazel | 0.21.0 |
| bazel | 0.23.1 |
| bazel | 0.24.1 |
| bazel | 0.29.1 |
| bazel | 5.1.1 |
| bbmap | 38.51 |
| bcbio-nextgen | 1.2.4 |
| bcftools | 1.5 |
| bcftools | 1.9-40 |
| bcftools | 1.11 |
| bcftools | 1.15.1 |
| bcl2fastq2 | 2.20.0 |
| beast | 1.10.4 |
| bedops | 2.4.35 |
| bedtools | 2.26.0 |
| bedtools | 2.27.1 |
| bedtools | 2.29.0 |
| bedtools | 2.30.0 |
| berkeleygw | 1.2.0 |
| bioawk | 1 |
| biobambam2 | 2.0.87 |
| biobambam2 | 2.0.183 |
| bionano | 1.7.0 |
| bionano_tools | 1.5.3 |
| bionic | 0.2.5_a100 |
| bionic | 0.2.5_gtx1080 |
| biopython | 1.73 |
| biotoolbox | 1.63 |
| bismark | 0.20.0 |
| bison | 3.7 |
| blast+ | 2.2.31 |
| blast+ | 2.7.1 |
| blast+ | 2.13.0 |
| blender | 2.79b |
| blender | 2.90.1 |
| bonito | 0.5.1 |
| boost-compiled | 1.62.0 |
| boost-compiled | 1.64.0 |
| boost-compiled | 1.68.0_anaconda-3.6 |
| boost-compiled | 1.68.0 |
| boost-compiled | 1.69.0 |
| boost-compiled | 1.71.0 |
| boost | 1.62.0 |
| boost | 1.66.0 |
| boost | 1.68.0 |
| boost | 1.71.0 |
| bowtie | 1.1.1 |
| bowtie | 1.2.2 |
| bowtie | 1.3.0 |
| bowtie2 | 2.3.3 |
| bowtie2 | 2.3.4.2 |
| bowtie2 | 2.3.5.1 |
| bowtie2 | 2.4.1 |
| bowtie2 | 2.4.5 |
| braker2 | 2.1.2 |
| breseq | 0.33.1 |
| busco | 5.3.2 |
| bustools | 0.41.0 |
| bwa-mem2 | 2.2.1 |
| bwa | 0.7.17 |
| bwtool | 1.0.0 |
| byobu | 5.133 |
| bzip2 | 1.0.6 |
| cactus | 20180831 |
| cadence | SPB22.10.004 |
| cadence | 6.18.050-INNOV-21.10 |
| cadence | 6.18.050 |
| cadence | 6.18.190 |
| cadical | 1.4.0 |
| caffe | 1.0-matcaffe |
| caffe | 1 |
| calibre | test |
| calibre | 2019.3_37.23 |
| cantera | 2.5 |
| canu | 1.7.1 |
| cap3 | cap3 |
| caper | 2.2.2 |
| causalml | 0.12.0 |
| cellphonedb | 1.1.0 |
| cellphonedb | 2.1.4 |
| cellprofiler | 4.2.1 |
| cellranger-arc | 1.0.0 |
| cellranger-arc | 1.0.1 |
| cellranger-arc | 2.0.0 |
| cellranger-arc | 2.0.1-max-cells-60000 |
| cellranger-arc | 2.0.2-max-cells-60000 |
| cellranger-atac | 1.1.0 |
| cellranger-atac | 1.2.0 |
| cellranger-atac | 2.0.0 |
| cellranger-atac | 2.1.0 |
| cellranger | 2.1.0 |
| cellranger | 2.2.0 |
| cellranger | 3.0.0 |
| cellranger | 3.0.2 |
| cellranger | 3.1.0 |
| cellranger | 4.0.0 |
| cellranger | 5.0.0 |
| cellranger | 5.0.1 |
| cellranger | 6.0.0 |
| cellranger | 6.0.1 |
| cellranger | 6.1.1 |
| cellranger | 6.1.2 |
| cellranger | 7.0.0 |
| cellranger | 7.0.1 |
| cellranger | 7.1.0 |
| cellxgene | 0.16.7 |
| cellxgene | 1.0.0 |
| chapel | 1.15 |
| checkm | 1.1.2 |
| chroma | 0.0.5 |
| chrome | 100.0.4896.60 |
| chromedriver | 92.0.4515.107 |
| chromedriver | 101.0.4951.41 |
| circompara | 1.1 |
| circos | 0.69-6 |
| ciscall | ciscall7 |
| cite-seq-count | 1.2 |
| cite-seq-count | 1.4.3 |
| cite-seq-count | 1.4.4 |
| clair3 | 0.1-r12 |
| clang | 5.0.0 |
| clang | 9.0.0 |
| clark | 1.2.6.1 |
| clc-assembly-cell | 5.1.1 |
| clinker | 1.32 |
| clinqc | 1.1 |
| clonalframeml | 1.12 |
| clustalw | 2.1 |
| cmake | 3.7.1 |
| cmake | 3.13.3 |
| cmake | 3.19.7 |
| cmappy | 4.0.1 |
| cnvkit | 0.8.5 |
| cnvkit | 0.9.5 |
| cnvnator | 0.3.3 |
| code-server | 3.10.2 |
| code-server | 4.5.1 |
| comsol | check_license |
| comsol | 5.6-teaching |
| comsol | 5.6 |
| comsol | 6.1 |
| conn_toolbox | conn21 |
| control-freec | 11.5 |
| convert3d | 1.3.0 |
| cooler | 0.8.11 |
| cooltools | 0.5.2 |
| cosmosscope | p-2019.06 |
| cp2k | 4.1-legacy |
| cp2k | 4.1 |
| cp2k | 5.1 |
| cp2k | 6.1 |
| cp2k | 7.1 |
| cpat | 1.2.4 |
| crimap | 2.507 |
| cromwell | 46 |
| ctpnet | dev-nov-1-2019 |
| cuba | 4.1 |
| cuba | 4.2 |
| cuda | 6.5 |
| cuda | 7.5.18 |
| cuda | 8.0.44 |
| cuda | 9 |
| cuda | 9.1.85 |
| cuda | 10.0.130 |
| cuda | 10.1 |
| cuda | 11 |
| cuda | 11.1.1 |
| cuda | 11.2.0 |
| cuda | 11.2.2 |
| cuda | 11.3.0 |
| cuda | 11.5.0 |
| cuda | 11.6.1 |
| cuda | 11.7.1 |
| cuda | 11.8_lua_new |
| cuda | 11.8_lua_old |
| cuda | 11.8 |
| cufflinks | 2.2.1 |
| cuquantum | 22.11.0.13 |
| curl | 7.50.3 |
| curl | 7.51.0 |
| curl | 7.52.1 |
| custom_waveview | p-2019.06-sp2 |
| customsim | p-2019.06-sp5 |
| cutadapt | 1.17 |
| cutadapt | 1.18 |
| cutadapt | 2.1 |
| cutensor | 1.6.2.3 |
| cutruntools | 1028_2019 |
| cytoscape | 3.7.0 |
| cytoscape | 3.9.0 |
| damask | 2.0.1 |
| danpos2 | 2.2.2 |
| dapars | 0.9.1 |
| datalad | 0.11.1 |
| datalad | 0.15.1 |
| dcm2niix | 1.0.20171215 |
| deepbinner | 0.2.0 |
| deeplabcut | 2 |
| deeptools | 2.5.3 |
| deeptools | 3.1.2 |
| deeptools | 3.3.0 |
| deepvariant | 0.8.0 |
| deepvariant | 0.10.0 |
| defuse | 0.8.1 |
| degnorm | oct4_2018 |
| delly | 0.7.8 |
| delly | 0.8.5 |
| delly | 1.0.3 |
| detonate | 1.11 |
| deviceQuery | 0 |
| diachromatic | 0.6.0 |
| diamond | 2.0.15 |
| discovardenovo | 52488 |
| dms_tools2 | 2.4.10 |
| dolfinx | 0.5.1 |
| doxygen | 1.8.13 |
| drop-seq | 2.3.0 |
| dsistudio | 6/9/22 |
| dx-toolkit | 0.291.1 |
| dynare | 4.6-unstable |
| eagle | 2.4.1 |
| eclipidrmergepeaks | 0.0.5 |
| edirect | 10.6 |
| eigen | 3.3.1 |
| eigen | 3.3.7 |
| eigen | 3.4.0 |
| eman2 | 2.31 |
| emboss | 6.6.0 |
| emmax | 7-Mar-10 |
| emmax | 20120210 |
| encfs | 1.9.1 |
| epacts | 3.3.0 |
| expat | 2.4.1 |
| f-seq | 1.85 |
| fabtests | 1.7.0 |
| fanc | 0.9.0 |
| fanc | 0.9.23b |
| fastp | 0.19.6 |
| fastq_pair | fastq_pair |
| fastq_screen | 0.13.0 |
| fastqc | 0.11.7 |
| fastqc | 0.11.9 |
| fasttree | 2.1.10 |
| fastx-toolkit | 0.0.14 |
| fdtd | 2021R2 |
| febio | 2.6.2 |
| febio | 2.8.5 |
| febio | 2.9.1 |
| febio | 3.4 |
| febio | 4.2 |
| ffmpeg | 4.3.2 |
| fftw | 3.3.5 |
| fftw | 3.3.7 |
| fftw | 3.3.8-double |
| fftw | 3.3.8-float |
| fftw | 3.3.8 |
| fftw | 3.3.9 |
| fftw | 3.3.10 |
| fhiaims | 160328_3 |
| fiji | 2.9.0 |
| finesim | p-2019.06-sp2-2 |
| fish | 3.1.2 |
| fitsio | 3.43 |
| flashpca | 2 |
| flex | 2.6.4 |
| flye | 2.5 |
| flye | 2.9 |
| fontconfig | 2.10.95 |
| fqtrim | 0.9.5 |
| freebayes | 1.2.0 |
| freefem | 3.61 |
| freefem | 3.62 |
| freesurfer | dev_July_11_2019 |
| freesurfer | 6.0.0 |
| freesurfer | 7.1.0 |
| freesurfer | 7.1.1 |
| fsl | 5.0.10 |
| fsl | 5.0.11-centos |
| fsl | 5.0.11 |
| fsl | 6.0.4 |
| fsleyes | 0.22.6 |
| fsps | 3.1 |
| fusion-inspector | 1.3.1 |
| fusioncatcher | 1.2 |
| fusioncatcher | 1.33 |
| gamess | dev |
| gamess | release |
| gamess | webmo |
| gatb | 1.4.1 |
| gatk | 3.6-6-ngs.2.9.2 |
| gatk | 3.8.1 |
| gatk | 4.0.8.1 |
| gatk | 4.1.2.0 |
| gatk | 4.1.4.0 |
| gatk | 4.1.5.0 |
| gatk | 4.1.6.0 |
| gatk | 4.1.8.1 |
| gatk | 4.2.2.0 |
| gaussian | D.01 |
| gaussian | 16-A.03 |
| gaussian | 16-B.01-AVX2 |
| gaussian | 16-B.01 |
| gaussian | 16-C.01 |
| gblocks | 0.91b |
| gcc | 4.4.0 |
| gcc | 4.7.4 |
| gcc | 4.8.5 |
| gcc | 4.9.4 |
| gcc | 5.4.0 |
| gcc | 6.3.0 |
| gcc | 7.3.0 |
| gcc | 8.2.0 |
| gcc | 9.2.0 |
| gcc | 10.2.0 |
| gcc | 12.2.0 |
| gdal | 2.4.2_gcc10.2.0 |
| gdal | 2.4.2 |
| gdal | 2.4.4 |
| gdc-tsv-tool | 2.1 |
| gdma | 2.3 |
| gdrcopy | 2 |
| genotypeharmonizer | 1.4.23 |
| genrich | 0.5 |
| genrich | 0.6 |
| geos | 3.8.1 |
| geos | 3.8.2 |
| gfold | 1.1.4 |
| ghostscript | 9.21 |
| gistic | 2.0.23 |
| git-annex | 8.20211118 |
| git | 2.9.5 |
| git | 2.33.0 |
| github | 2.0.0 |
| glew | 2.1.0 |
| glimmer | 3.02 |
| glnexus | 1.4.1 |
| globus-cli | 3.9.0 |
| glpk | 4.65 |
| glpk | 5 |
| gmap-gsnap | 7/4/18 |
| gmsh | 3.0.6 |
| gnuplot | 4.6.7 |
| gnuplot | 5.2.4 |
| go | 1.11.5 |
| go | 1.14.1 |
| go | 1.17.1 |
| go | 1.19.6 |
| gomcl | nov_9_2021 |
| google-cloud-sdk | 304.0.0 |
| googletest | 1.8.1 |
| googletest | 1.11.0 |
| gossamer | Jan-17 |
| gotcloud | 1.17.5 |
| gpaw | 1.3.0 |
| gpaw | 1.4.0 |
| gpaw | 1.5.1 |
| gperf | 3.0.4 |
| grace | 5.1.25 |
| graphviz | 2.40.1 |
| gromacs | 4.6.5 |
| gromacs | 5.1.4-plumed |
| gromacs | 5.1.4 |
| gromacs | 2018.1 |
| gromacs | 2020.3 |
| gromacs | 2021.2 |
| gsl | 2.3 |
| gsl | 2.5 |
| gsl | 2.7 |
| gsl | 2.7.1 |
| gsutil | 5.16 |
| gubbins | 2.4.1 |
| gulp | 5 |
| guppy | 2.3.5 |
| guppy | 4.0.15 |
| guppy | 4.2.2_gpu |
| guppy | 4.2.2 |
| guppy | 6.1.2_gpu |
| guppy | 6.1.2 |
| gurobi | 8.1.0 |
| gurobi | 9.0.1 |
| gurobi | 9.1.2 |
| gym | 0.21.0 |
| hail | 0.2.74 |
| hclust | 1 |
| hdf5 | 1.8.16 |
| hdf5 | 1.10.0 |
| hdf5 | 1.10.2 |
| hdf5 | 1.10.4 |
| hdf5 | 1.10.7 |
| hdf5 | 1.12.1 |
| hdf5 | 1.12.2 |
| hdf5 | 1.14.0 |
| hicpro | 3.1.0_conda |
| hicpro | 3.1.0_singularity |
| hifive | 1.5.6 |
| hisat2 | 2.1.0-ngs.2.9.2 |
| hisat2 | 2.1.0 |
| hisat2 | 2.2.0 |
| hisat2 | 2.2.1 |
| hmmer | 3.2.1 |
| homer | 4.9.1 |
| homer | 4.10.3 |
| hpl | 2.3 |
| hspice | p-2019.06-sp2-2 |
| htseq | 0.10.0 |
| htseq | 0.11.2 |
| htseq | 0.13.5 |
| htslib | 1.5 |
| htslib | 1.9 |
| humann2 | 2.8.1 |
| humann2 | 2.8.2 |
| hydra | 3.2 |
| hypre | 2.11.2 |
| icecascade | rb-apr13 |
| icecascade | 1.0.0 |
| icount | 2.0.0 |
| idp-fusion | 1.1.1 |
| idp | 0.1.9 |
| idr | 2.0.3 |
| igv | 2.4.16 |
| igv | 2.9.4 |
| igv | 2.15.4 |
| ilash | 1.0.2 |
| ilastik | 1.4.0rc5 |
| imagej | 1.52p |
| imagemagick | 7.0.7-22 |
| imagemagick | 7.0.8-44 |
| indrops | 0.3.3 |
| infercnv | 0.99.4 |
| infercnv | 0.99.7 |
| inspector | 2019.4 |
| intel-mpi | 2017.1.132 |
| intel-mpi | 2017.3.196 |
| intel-mpi | 2018.2.199 |
| intel-mpi | 2019.4 |
| intel-mpi | 2020.4 |
| intel | oneapi_2023.0.0 |
| intel | 2011.12.361 |
| intel | 2017.1.132 |
| intel | 2017.3.196 |
| intel | 2018.2.199 |
| intel | 2019.4 |
| intel | 2020.4 |
| interproscan | 5.57-90 |
| ipc | 1 |
| ipyrad | 0.7.28 |
| iq-tree | 1.6.12 |
| itk | 20190225 |
| iva | 1.0.9 |
| jaaba | 10/1/18 |
| jags | 4.3.0 |
| jags | 4.3.1 |
| jags | 4.3.2 |
| jansson | 2.13.1 |
| java | jre1.8.0_241 |
| java | 1.6.0-oracle |
| java | 1.7.0_79 |
| java | 1.8.0_121 |
| java | 1.8.0_181-oracle |
| java | 11.0.2-openjdk |
| java | 16.0.1-openjdk |
| jbrowse2 | 1.3.0 |
| jdftx | 1.3.1 |
| jdftx | 1.6.0 |
| jellyfish | 2.2.10 |
| jmol | 14.18.1 |
| joe | 4.6 |
| julia | 0.6.1 |
| julia | 1.2.0 |
| julia | 1.5.1 |
| julia | 1.6.2 |
| julia | 1.6.3 |
| kaldi | git |
| kallisto | 0.43.1 |
| kallisto | 0.44.0 |
| kallisto | 0.46.1 |
| kentutils | v370 |
| kentutils | 3.0.2 |
| king | 2.3.0 |
| kite | july7_2019 |
| kneaddata | 0.7.4 |
| kneaddata | 0.7.7alpha |
| kneaddata | 0.8.0 |
| kpp | 2.2.3 |
| kraken2 | 2.0.9beta |
| kraken2 | 2.1.1 |
| krona | 2.7.1 |
| lammps | stable_31Mar2017 |
| lammps | 15-Jun-23 |
| lammps | 16-Mar-18 |
| lapack | 3.7.0 |
| lapack | 3.8.0 |
| lc | s-2021.06-sp5 |
| lcov | 1.15 |
| ldpred | 1.0.0 |
| leafcutter | 0.2.9 |
| libevent | 2.1.11 |
| libfabric | 1.7.0 |
| libfaketime | 0.9.7 |
| libgtextutils | 0.7 |
| libjpeg | 8d |
| libpng | 1.6.2 |
| libtiff | 4.0.8 |
| libxc | 2.0.2 |
| libxc | 4.0.4 |
| libxml2 | 2.9.3 |
| libzmq | 4.3.4 |
| lightgbm | 2.2.3 |
| lncfuntk | 1 |
| lofreq | 2.1.5 |
| lofreq | 3.0.0-rc1 |
| lohhla | v20171108 |
| loompy | 3.0.7 |
| loomr | 0.2.0 |
| lua | 5.2.4 |
| lua | 5.4.3 |
| luarocks | 2.0.6 |
| lumerical | 2021R2 |
| lumerical | 2022R2.1 |
| lumerical | 2023R1.2 |
| macs | 2.1.0.20150420 |
| macs | 2.1.1.20160309 |
| macs | 2.2.7.1 |
| mafft | 7.471 |
| mageck | 0.5.9 |
| magicblast | 1.4.0 |
| magma | 2.25-6 |
| make | 4.3 |
| malt | 0.4.1 |
| manta | 1.6.0 |
| mapsplice2 | 2.2.1 |
| masurca | 4.0.5 |
| mathematica | 11.3 |
| mathematica | 12 |
| mathematica | 12.1 |
| mathematica | 13.2 |
| matlab-mcr | R2016b |
| matlab-mcr | R2018a |
| matlab-proxy | 0.1.0 |
| matlab-proxy | 0.2.4 |
| matlab-proxy | 0.5.11 |
| matlab | R2015a |
| matlab | R2017a |
| matlab | .R2017b.back |
| matlab | R2018a |
| matlab | R2019b_htc-n31 |
| matlab | R2019b-alt |
| matlab | R2019b |
| matlab | R2020b |
| matlab | R2021a |
| matlab | R2021b |
| matlab | R2022a |
| matlab | R2023a |
| matlab_web_app_server | R2023a |
| mauve | 2.4.0.snapshot_2015_02_13 |
| maven | 3.5.0 |
| medea | 2.22.3 |
| meerkat | 0.189 |
| mega2 | 6.0.0 |
| megahit | 1.1.3 |
| megahit | 1.2.9 |
| megalodon | 2.5.0_guppy_6.1.2 |
| meme | 5.4.1 |
| merlin | 1.1.2 |
| meshlab | 2021.10-backup |
| meshlab | 2021.1 |
| metabat2 | 2.15 |
| metal | 3/25/11 |
| metaphlan | 3.0.7 |
| metis | 5.1.0 |
| mgltools | 1.5.6 |
| midnightcommander | 4.8.28 |
| minimac4 | 1.0.0 |
| minimap2 | 2.24 |
| minvar | 2.2.2 |
| mira | 4.0.2 |
| mirdeep2 | 0.1.0 |
| mirge | 2.0.6 |
| miso | 0.5.4 |
| mixcr | 3.0.12 |
| mixcr | 4.2.0 |
| mkl | 2017.1.132 |
| mkl | 2017.3.196 |
| mkl | 2018.2.199 |
| mkl | 2019.4 |
| mmseqs2 | 5-9375b |
| mmseqs2 | 1.47E+285 |
| modeller | 10.2 |
| modelsim | 2019.1 |
| molden | 5.7.0 |
| molecularGSM | orca |
| molpro | 2015.1.7 |
| molpro | 2018.2.0 |
| molpro | 2020.2.1 |
| molpro | 2022.2.2 |
| mongodb | 4.0.1 |
| mopac | 2016 |
| mosek | 8.1.0 |
| mpich | 3.1 |
| mrbayes | 3.2.7 |
| mrcc | 3/18/22 |
| mricrogl | 1.2.20211006 |
| mricron | 9/11/19 |
| mrqa | 0.1.7 |
| mrtrix | 3.0_rc4 |
| mrtrix | 3 |
| mrtrix3 | 3.0.0 |
| multinest | 3.10b_OMPI |
| multinest | 3.10b |
| multinest | 3.1 |
| multiqc | 1.7 |
| multiqc | 1.8 |
| multiqc | 1.10.1 |
| multiqc | 1.12 |
| multiqc | 1.13 |
| mummer | 4.0.0beta2 |
| muscle | 3.8.1551 |
| muscle | 5.1 |
| mutsig | 1.41 |
| namd | 2.12b1-multicore-CUDA |
| namd | 2.12b1-tcp |
| namd | 2.12-multicore-CUDA |
| namd | 2.12-node |
| namd | 2.12-openmpi |
| namd | 2.12 |
| namd | 2.13-mpi |
| namd | 2.13-multicore-CUDA |
| namd | 2.13-multicore |
| namd | 2.13 |
| nano | 4.6 |
| nanofilt | 2.8.0 |
| nanoplot | 1.0.0 |
| nanoplot | 1.27.0 |
| napari | 0.4.18 |
| nauty | 2.6r12 |
| nccl | 2.8.3 |
| nccl | 2.8.4 |
| nccl | 2.9.9 |
| nccl | 2.12.7 |
| nccl | 2.16.5 |
| nektar++ | 4.4.0 |
| nektar++ | 4.4.1 |
| nektar++ | 5.0.0 |
| nektar | 1.0.0 |
| neovim | 0.3.1 |
| netcdf | 4.6.2 |
| netcdf | 4.6.3 |
| netcdf | 4.8.1 |
| netpbm | 10.73.37 |
| neuron | 7.4_gcc-5.4.0 |
| nextflow | 18.10.1.5003 |
| nextflow | 19.02.0 |
| nextflow | 19.10.0 |
| nextflow | 20.04.1 |
| nextflow | 20.10.0 |
| nextflow | 21.04.0 |
| nextflow | 21.10.3 |
| nextflow | 22.04.3 |
| nextflow | 22.10.7 |
| nextflow | 23.04.2 |
| nextgenmap | 0.5.0 |
| nf-core | 2.9 |
| nfcore | atacseq-1.1.0 |
| nfcore | atacseq-1.2.0 |
| nfcore | mag-1.0.0 |
| nfcore | rnafusion-1.0.2 |
| nfcore | rnaseq-1.3 |
| nfcore | rnaseq-1.4.2 |
| nfcore | sarek-2.5.1 |
| ngmerge | 0.3 |
| ngsplot | 2.63 |
| ngsqc | 1.0.0 |
| nodejs | 12.13.0 |
| nodejs | 14.15.3 |
| nodejs | 16.20.1 |
| nodejs | 18.16.0 |
| notung | 2.9.1.5 |
| novocraft | 3.09.01 |
| nsight-systems | 2022.5.1 |
| nucleoatac | 0.3.4 |
| nvidia-hpc-sdk | 22.7 |
| nvidia-hpc-sdk | 23.5_gcc10.2.0 |
| nvidia-hpc-sdk | 23.5 |
| nvshmem | 0.3.0 |
| nvshmem | 0.4.1-0 |
| nvshmem | 1.0.1-0 |
| nvshmem | 1.0.1-0_no-mpi |
| nvshmem | 2.6.0 |
| onedrive | 2.4.15 |
| open-cravat | 2.2.5 |
| openbabel | 2.4.1 |
| openbabel | 3.1.1_conda-forge |
| openbabel | 3.1.1 |
| openblas | 0.3.10 |
| openblas | 0.3.23 |
| opencv | 3.4.0 |
| openfoam | 7 |
| openfoam | 8 |
| openmolcas | 21.02 |
| openmpi | 1.5.1 |
| openmpi | 1.6.5 |
| openmpi | 1.8.8.back |
| openmpi | 1.8.8 |
| openmpi | 1.10.2 |
| openmpi | 2.0.2_back |
| openmpi | 2.0.2_no-pmi |
| openmpi | 2.0.2 |
| openmpi | 2.1.1 |
| openmpi | 3.0.0_n16 |
| openmpi | 3.0.0 |
| openmpi | 3.1.1_disable-dlopen-back |
| openmpi | 3.1.1_disable-dlopen2-back |
| openmpi | 3.1.1 |
| openmpi | 3.1.4 |
| openmpi | 4.0.3rc3 |
| openmpi | 4.0.3 |
| openmpi | 4.0.5 |
| openmpi | 4.1.1 |
| openmpi | 4.1.5 |
| openslide-python | 1.1.2 |
| optitype | 1.3.2 |
| optitype | 1.3.5 |
| orca | 3.0.3 |
| orca | 4.0.2 |
| orca | 4.1.0 |
| orca | 4.2.0 |
| orca | 5.0.0 |
| orca | 5.0.3.mrcc |
| orca | 5.0.3 |
| osss-ucx | 1.0.2 |
| osss-ucx | 1.0.2-312-g9d437ba |
| ovito | 3.0.0 |
| p7zip | 16.02 |
| packmol | 18.169 |
| pairtools | 1.0.2 |
| paml | 4.9h |
| pandoc | 2.5 |
| pangolin | 3.1.7 |
| pangolin | 4.2 |
| parabricks | 4.0.1 |
| parallel | 5/22/17 |
| paraview | 5.3.0 |
| paraview | 5.4.1 |
| paraview | 5.6.0 |
| parmetis | 4.0.3 |
| parsplice | 121719 |
| pathml | 1.0.3 |
| pathml | 2.1.1 |
| pcre | 8.4 |
| pda | 1.0.3 |
| peakdeck | 1-1-pl |
| peakseq | 1.31 |
| peaksplitter | 1 |
| pear | 0.9.11 |
| pecube | 1.0.0 |
| pedcheck | 2011 |
| perl | 5.26.0_genomics |
| perl | 5.28.0 |
| petsc-gcc | 3.5.4 |
| petsc-gcc | 3.6.4 |
| petsc-gcc | 3.7.7 |
| petsc | 3.7.7 |
| petsc | 3.8.0 |
| petsc | 3.11.4 |
| pgi | 16.1 |
| pgi | 18.4 |
| pgi | 18.1 |
| pgi | 19.4 |
| pgi | 19.1 |
| phast | 1.5 |
| php | 7.4.11 |
| phylip | 3.697 |
| phyloacc | 0.1 |
| phyloacc | 1 |
| phyx | 1.1 |
| picard | 2.18.12 |
| pigz | 2.4 |
| pilon | 1.23 |
| pindel | 0.2.5b9 |
| piranha | 1.2.1 |
| pizzly | 0.37.3 |
| plink | 1.90_20230116 |
| plink | 1.90b6.7 |
| plink | 2.00_20230109 |
| plink | 2.3_alpha |
| plinkseq | 0.1 |
| plotjuggler | 3.2.0 |
| plumed | 2.3.3 |
| plumed | 2.4.1 |
| pmix | 2.2.3 |
| pmix | 3.1.5 |
| poltype | 10262021 |
| poppler | 0.74.0 |
| popt | 1.18 |
| porechop | 0.2.4 |
| postgresql | 12.9 |
| povray | 3.7.1-rc.1 |
| primer3 | 2.4.0 |
| prinseq | 0.20.4 |
| proj | 4.9.3 |
| proj | 5.0.1 |
| prokka | 1.14.6 |
| proovread | 2.14.1 |
| provirus | 0.3-devel |
| psi4 | 1.1 |
| psi4 | 1.3.2 |
| pureclip | 1.3.1 |
| pvactools | 1.5.3 |
| pvactools | 3.1.1 |
| pybedtools | 0.7.10 |
| pybedtools | 0.9.0 |
| pycharm | 2021.3.1 |
| pychopper | 2.5.0 |
| pyrouge | 0.1.3 |
| pyscenic | 0.10.3 |
| pyscenic | 0.12.0 |
| python | anaconda2.7-4.2.0_westpa |
| python | anaconda2.7-4.2.0 |
| python | anaconda2.7-4.4.0_genomics |
| python | anaconda2.7-5.2.0_westpa |
| python | anaconda2.7-5.2.0 |
| python | anaconda2.7-2018.12_westpa |
| python | anaconda3.5-4.2.0-dev |
| python | anaconda3.5-4.2.0 |
| python | anaconda3.6-5.2.0_deeplabcut |
| python | anaconda3.6-5.2.0_leap |
| python | anaconda3.6-5.2.0 |
| python | anaconda3.7-5.3.1_genomics |
| python | anaconda3.7-2018.12_westpa |
| python | anaconda3.7-2019.03_astro_bagpipes-0.8.2 |
| python | anaconda3.7-2019.03_astro_bagpipes-0.8.8-alt |
| python | anaconda3.7-2019.03_astro_bagpipes-0.8.8 |
| python | anaconda3.7-2019.03_astro |
| python | anaconda3.7-2019.03_deformetrica |
| python | anaconda3.7-2019.03 |
| python | anaconda3.8-2020.11 |
| python | anaconda3.9-2021.11 |
| python | anaconda3.10-2022.10 |
| python | bioconda-2.7-5.2.0 |
| python | bioconda-3.6-5.2.0 |
| python | bioconda-3.7-2019.03 |
| python | intel-3.5 |
| python | intel-3.6_2018.3.039 |
| python | intel-3.6_2019.2.066 |
| python | intel-3.6 |
| python | ondemand-jupyter-python3.8 |
| python | ondemand-jupyter-python3.9 |
| python | ondemand-jupyter-python3.10 |
| python | 3.7.0-dev |
| python | 3.7.0-fastx |
| python | 3.7.0 |
| pytorch | 0.4.1-py35 |
| pytorch | 0.4.1-py36 |
| pytorch | 0.4.1-py37 |
| pytorch | 1.5 |
| pytorch | 1.8.1 |
| pytorch | 2.0.0_gpu |
| pytorch_gpu | 1.11.0 |
| qapa | 1.2.1 |
| qchem | 4.4 |
| qchem | 5 |
| qchem | 5.3-pliu |
| qchem | 5.4-pliu |
| qchem | 6.0-pliu |
| qiime2 | 2018.8 |
| qiime2 | 2019.4 |
| qiime2 | 2020.2 |
| qiime2 | 2020.11 |
| qiime2 | 2022.11 |
| qmotif | 1.2 |
| qorts | 1.3.0 |
| qt | 5.7.0 |
| qt | 5.12.11 |
| qt | 5.15.0 |
| qualimap | 2.2.2 |
| quantumespresso | 6.1 |
| quantumespresso | 6.8 |
| quantumespresso | 7.2 |
| quast | 5.0.2 |
| quickmirseq | 2016 |
| quip | 0.9.14 |
| r | 3.3.2_genomics |
| r | 3.3.2 |
| r | 3.4.1 |
| r | 3.4.2 |
| r | 3.5.1 |
| r | 3.5.2_openmpi_no-pmi-back |
| r | 3.5.2_openmpi |
| r | 3.5.2 |
| r | 3.5.3 |
| r | 3.6.0 |
| r | 4.0.0 |
| r | 4.1.0 |
| r | 4.2.0 |
| r | 4.3.0 |
| racon | 1.3.1 |
| radia | 1.1.4 |
| rapsearch | 2.24 |
| raremetal | 4.15.1 |
| raxml-ng | 0.9.0 |
| rclone | 1.53.2 |
| rclone | 1.59.2 |
| rdkit | 2018_09_1 |
| rdkit | 2018_09_2 |
| rdkit | 2020_03_2 |
| readtools | 1.5.2 |
| reforge | May-19 |
| reforge | Aug-18 |
| regenie | 3.2.2 |
| regina | 6.0.1 |
| regtools | 0.5.2 |
| relion | 3.1.1 |
| relion | 3.1.2_gpu |
| rgt | 0.12.3 |
| rmats | 4.1.1 |
| rna-seqc | 1.1.8 |
| rnachipintegrator | 1.1.0 |
| rnacocktail | 0.2.2 |
| rnaseqmut | 0.7 |
| root | 6.26.10 |
| rosetta | 3.9 |
| rsem | 1.3.0 |
| rsem | 1.3.1 |
| rseqc | 2.6.6 |
| rseqc | 4.0.0 |
| rstudio | 1.1.453_server |
| rstudio | 1.1.463_server |
| rstudio | 1.2.5042_server |
| rstudio | 1.3.1073_server |
| rstudio | 1.4.1717_server |
| rstudio | 2022.02.2_server |
| rstudio | 2023.03.0_server |
| rtg-core | 3.1 |
| rvtests | 2.1.0 |
| s4 | 1.1.1 |
| salmon | 0.11.3 |
| salmon | 0.13.1 |
| salmon | 1.1.0 |
| salmon | 1.8.0 |
| sambamba | 0.6.8 |
| sambamba | 0.8.1 |
| samblaster | 0.1.24 |
| samstat | 1.5.1 |
| samtools | 0.1.19 |
| samtools | 1.5 |
| samtools | 1.9 |
| samtools | 1.1 |
| samtools | 1.12 |
| samtools | 1.14 |
| sas | 9.4_TS1M6.Rev19w17 |
| sas | 9.4.TS1M5.Rev18w21 |
| scala | 2.12.2 |
| scanpy | 1.3.6 |
| scats | sep_16_2019_dev |
| scbayes | 0.1.2 |
| schlacount | 0.2.0 |
| seacr | 1.3 |
| seqcover | 0.0.5 |
| seqkit | 0.16.0 |
| seqspark | test |
| seqtk | 1.3 |
| shap | 0.40.0 |
| shapeit4 | 4.1.3 |
| sicer | 1.1 |
| sicer2 | 1.0.3 |
| sickle | 1.33 |
| siesta | 4.1 |
| simpleitk | 2.0.2 |
| singularity | 2.2.99 |
| singularity | 2.3 |
| singularity | 2.4.2 |
| singularity | 2.6.1 |
| singularity | 3.1.0 |
| singularity | 3.5.3 |
| singularity | 3.7.0 |
| singularity | 3.8.3 |
| singularity | 3.9.6 |
| sjaracne | 0.2.1 |
| slurm | 16.05.6 |
| smoove | 0.2.3 |
| snakemake | 5.4.0 |
| snakemake | 6.6.1 |
| snap-aligner | 1.0beta.23 |
| snp-pileup | 0.6.1 |
| snpeff | 4.3t |
| snpsplit | 0.6.0 |
| snptest | 2.5.2 |
| snver | 0.5.3 |
| snvmix2 | 0.11.8-r5 |
| soapindel | 2.1.7.17 |
| solar | 8.1.4 |
| somatic-sniper | 1.0.5 |
| sortmerna | 3.0.3 |
| sortmerna | 4.2.0 |
| sox | 14.4.2 |
| spaceranger | 1.1.0 |
| spaceranger | 1.3.1 |
| spades | 3.12.0 |
| spark | 2.4.5 |
| sparrow | 1.0.0 |
| spladder | 2.4.2 |
| spm | SPM12 |
| spreg | 2 |
| squashfs-tools | 4.4 |
| squid | 1.5 |
| sra-toolkit | 2.9.2 |
| sra-toolkit | 2.10.8 |
| sra-toolkit | 2.11.3 |
| sra-toolkit | 3.0.2 |
| srnanalyzer | 2017 |
| sspa | 0.1.5 |
| star-fusion | 1.5.0 |
| star-fusion | 1.8.1 |
| star-seqr | 0.6.7 |
| star | 2.6.1a |
| star | 2.7.0e |
| star | 2.7.3a |
| star | 2.7.5a |
| star | 2.7.9a |
| stata | 16 |
| strelka | 2.9.8 |
| stringtie | 1.3.3b |
| stringtie | 1.3.4d |
| stringtie | 2.1.3b |
| structure | 2.3.4 |
| stubb | 2.1 |
| subread | 1.5.3 |
| subread | 1.6.2 |
| subread | 2.0.1 |
| surfaceGSM | cp2k |
| surfaceGSM | cp2k-2019-multinode-v2 |
| surfaceGSM | cp2k-2019-multinode |
| surfaceGSM | cp2k-2019-v2 |
| surfaceGSM | cp2k-2019 |
| surfaceGSM | vasp |
| svaba | 0.2.1 |
| svdetect | 0.8b |
| svviz2 | 2.0a3 |
| synopsys | p-2019.03-sp4 |
| taiji-view | 0.1.0 |
| taiji | 0.5.0 |
| taiji | 1.2.0 |
| teaching | biosc1540-2017S |
| teaching | biosc1540-2018f |
| teaching | biosc1542-2020s |
| teaching | biosc1542-2021s |
| teaching | biosc1542-2022s |
| telescope | 1.0.3 |
| tensorflow | test_do_not_use |
| tensorflow | 1.12.0-py36 |
| tensorflow | 1.13.1-py37-cpu |
| tensorflow | 2.4.1 |
| texlive | 2016 |
| texlive | 2019 |
| texlive | 2021 |
| tinker | 8.7.2 |
| tinker | 8.9 |
| tinker | 8.10.1 |
| tmux | 2.8 |
| tmux | 3.0a |
| tokyo | 1.4.48 |
| tophat | 2.1.1 |
| torch | 7 |
| tpmcalculator | 0.0.4 |
| tracer | 0.6.0 |
| transdecoder | 5.3.0 |
| trf | 4.09.1 |
| trilinos | 12.12.1 |
| trimgalore | 0.5.0 |
| trimgalore | 0.6.5 |
| trimmomatic | 0.38 |
| trinity | 2.8.3 |
| trinity | 2.13.2 |
| trust | 3.0.3 |
| trust4 | 0.1.2 |
| trust4 | 1.0.7 |
| turbomole | 7.02-smp |
| turbomole | 7.21-smp |
| ucsc-cell-browser | 1.1.1 |
| ucx | 1.7.0 |
| ucx | 1.8.0 |
| ultimaker-cura | 4.13.0 |
| umi-tools | 0.5.5 |
| umi-tools | 1.0.0 |
| unceqr | 0.2 |
| valgrind | 3.13.0 |
| vardictjava | 1.5.8 |
| vardictjava | 1.8.2 |
| varscan | 2.4.2 |
| vasp-vtst | 5.4.1.solvation |
| vasp-vtst | 5.4.1 |
| vasp-vtst | 5.4.4.solvation |
| vasp-vtst | 6.1.1 |
| vasp | gpu |
| vasp | 5.4.1 |
| vasp | 5.4.4.mv-vfm |
| vasp | 5.4.4.salvation |
| vasp | 5.4.4.solvation_patch541 |
| vasp | 5.4.4.wannier |
| vasp | 5.4.4 |
| vasp | 6.1.1.r2scan |
| vasp | 6.1.1 |
| vasp | 6.3.2 |
| vcf2maf | 1.6.8 |
| vcf2maf | 1.6.16 |
| vcf2maf | 1.6.18 |
| vcflib | 1.0.0 |
| vcftools | 0.1.15 |
| vcftools | 0.1.16 |
| vcs | s-2021.09-sp1 |
| vdjtools | 1.2.1 |
| velocyto | 0.17 |
| velvet | 1.2.10 |
| venv | wrap |
| vep | 85 |
| vep | 93 |
| vep | 95 |
| vfs | 2016-08-17.r2 |
| viennarna | 2.5.1 |
| vim | 8 |
| vim | 8.1 |
| virtualgl | 2.6.5 |
| virtuoso-opensource | 7.2.6.1 |
| virus_detection_sra | 0.2 |
| virusfinder | 2 |
| virvarseq | 4/28/15 |
| visit | 2.12.3 |
| vlsi | 2019 |
| vmd | 1.9.2 |
| vmd | 1.9.3 |
| vscode | 1.59 |
| vtk | 8.1.0 |
| vtune | 2017.3.196 |
| vtune | 2018.2.199 |
| vtune | 2019.4 |
| vvp | 1.5 |
| westpa | 1.0b.lub |
| westpa | 2 |
| westpa | 2017.10.lub |
| westpa | 2019.03.lub |
| westpa | 2019.1 |
| wine | 6.17 |
| wine | 8.0.2 |
| wolframlanguageforjupyter | 0.9.3 |
| xhmm | 1/4/16 |
| xilinx/containers | 2018.2 |
| xilinx/sdx | 2018.3 |
| xilinx/sdx | 2019.1 |
| xilinx/vitis | 2019.2 |
| xilinx/vitis | 2020.1 |
| xilinx/vitis | 2020.2 |
| xilinx/vivado | 2019.1 |
| xtb | 1 |
| xz | 5.2.3 |
| zlib | 1.2.9 |
| zlib | 1.2.11 |
| zoltan | 3.83.0 |